J3_7SYN_015
3D structure
- PDB id
- 7SYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 8(delta dII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 7SYN|1|2|A|1454, 7SYN|1|2|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYN|1|2|C|1391
7SYN|1|2|U|1392
7SYN|1|2|G|1393
7SYN|1|2|G|1394
7SYN|1|2|C|1395
*
7SYN|1|2|G|1450
7SYN|1|2|G|1451
7SYN|1|2|A|1452
7SYN|1|2|C|1453
7SYN|1|2|A|1454
7SYN|1|2|A|1455
7SYN|1|2|G|1456
*
7SYN|1|2|C|1470
7SYN|1|2|C|1471
7SYN|1|2|C|1472
7SYN|1|2|G|1473
7SYN|1|2|A|1474
7SYN|1|2|G|1475
7SYN|1|2|A|1476
7SYN|1|2|U|1477
7SYN|1|2|U|1478
7SYN|1|2|G|1479
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain E
- uS3
- Chain G
- uS7
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain d
- eS28
- Chain e
- uS14
- Chain h
- Receptor for Activated C Kinase 1 (RACK1)
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