J3_7SYO_004

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCGG*CUUCCG*CAAAG

Length

15 nucleotides

Bulged bases

7SYO|1|2|C|1138, 7SYO|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|C|1094
7SYO|1|2|C|1095
7SYO|1|2|G|1096
7SYO|1|2|G|1097
*
7SYO|1|2|C|1135
7SYO|1|2|U|1136
7SYO|1|2|U|1137
7SYO|1|2|C|1138
7SYO|1|2|C|1139
7SYO|1|2|G|1140
*
7SYO|1|2|C|1147
7SYO|1|2|A|1148
7SYO|1|2|A|1149
7SYO|1|2|A|1150
7SYO|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain D

40S ribosomal protein S2

Chain O

uS15

Chain W

eS21

Chain X

uS8

Chain b

eS26

Chain c

eS27