J3_7SYO_009

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UCUUAGUU*AACGAGAC*GCAAUAA

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|U|1340
7SYO|1|2|C|1341
7SYO|1|2|U|1342
7SYO|1|2|U|1343
7SYO|1|2|A|1344
7SYO|1|2|G|1345
7SYO|1|2|U|1346
7SYO|1|2|U|1347
*
7SYO|1|2|A|1382
7SYO|1|2|A|1383
7SYO|1|2|C|1384
7SYO|1|2|G|1385
7SYO|1|2|A|1386
7SYO|1|2|G|1387
7SYO|1|2|A|1388
7SYO|1|2|C|1389
*
7SYO|1|2|G|1481
7SYO|1|2|C|1482
7SYO|1|2|A|1483
7SYO|1|2|A|1484
7SYO|1|2|U|1485
7SYO|1|2|A|1486
7SYO|1|2|A|1487

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

uS14