J3_7SYO_014

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYO|1|2|G|1394, 7SYO|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYO|1|2|C|1391
7SYO|1|2|U|1392
7SYO|1|2|G|1393
7SYO|1|2|G|1394
7SYO|1|2|C|1395
*
7SYO|1|2|G|1450
7SYO|1|2|G|1451
7SYO|1|2|A|1452
7SYO|1|2|C|1453
7SYO|1|2|A|1454
7SYO|1|2|A|1455
7SYO|1|2|G|1456
*
7SYO|1|2|C|1470
7SYO|1|2|C|1471
7SYO|1|2|C|1472
7SYO|1|2|G|1473
7SYO|1|2|A|1474
7SYO|1|2|G|1475
7SYO|1|2|A|1476
7SYO|1|2|U|1477
7SYO|1|2|U|1478
7SYO|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain d

eS28

Chain e

uS14

Chain h

Receptor for Activated C Kinase 1 (RACK1)