J3_7SYP_012

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAAAG*CGCAAAU*AGUGACG

Length

19 nucleotides

Bulged bases

7SYP|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|C|37
7SYP|1|2|A|38
7SYP|1|2|A|39
7SYP|1|2|A|40
7SYP|1|2|G|41
*
7SYP|1|2|C|481
7SYP|1|2|G|482
7SYP|1|2|C|483
7SYP|1|2|A|484
7SYP|1|2|A|485
7SYP|1|2|A|486
7SYP|1|2|U|487
*
7SYP|1|2|A|512
7SYP|1|2|G|513
7SYP|1|2|U|514
7SYP|1|2|G|515
7SYP|1|2|A|516
7SYP|1|2|C|517
7SYP|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain Y

uS12