J3_7SYP_013

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCGG*CUUCCG*CAAAG

Length

15 nucleotides

Bulged bases

7SYP|1|2|C|1138, 7SYP|1|2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYP|1|2|C|1094
7SYP|1|2|C|1095
7SYP|1|2|G|1096
7SYP|1|2|G|1097
*
7SYP|1|2|C|1135
7SYP|1|2|U|1136
7SYP|1|2|U|1137
7SYP|1|2|C|1138
7SYP|1|2|C|1139
7SYP|1|2|G|1140
*
7SYP|1|2|C|1147
7SYP|1|2|A|1148
7SYP|1|2|A|1149
7SYP|1|2|A|1150
7SYP|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2 (SA)

Chain O

uS15

Chain W

eS21

Chain X

uS8

Chain b

eS26

Chain c

eS27