J3_7SYQ_013

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUCUUAG*CGAGAC*GCAAUAAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYQ|1|2|G|1338
7SYQ|1|2|U|1339
7SYQ|1|2|U|1340
7SYQ|1|2|C|1341
7SYQ|1|2|U|1342
7SYQ|1|2|U|1343
7SYQ|1|2|A|1344
7SYQ|1|2|G|1345
*
7SYQ|1|2|C|1384
7SYQ|1|2|G|1385
7SYQ|1|2|A|1386
7SYQ|1|2|G|1387
7SYQ|1|2|A|1388
7SYQ|1|2|C|1389
*
7SYQ|1|2|G|1481
7SYQ|1|2|C|1482
7SYQ|1|2|A|1483
7SYQ|1|2|A|1484
7SYQ|1|2|U|1485
7SYQ|1|2|A|1486
7SYQ|1|2|A|1487
7SYQ|1|2|C|1488

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain E

uS3

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

uS14