J3_7SYR_008
3D structure
- PDB id
- 7SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(wt).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 7SYR|1|2|G|1256, 7SYR|1|2|A|1258, 7SYR|1|2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYR|1|2|C|1237
7SYR|1|2|U|1238
7SYR|1|2|U|1239
7SYR|1|2|A|1240
7SYR|1|2|A|1241
7SYR|1|2|U|1242
7SYR|1|2|U|1243
7SYR|1|2|U|1244
7SYR|1|2|G|1245
*
7SYR|1|2|C|1254
7SYR|1|2|G|1255
7SYR|1|2|G|1256
7SYR|1|2|G|1257
7SYR|1|2|A|1258
7SYR|1|2|A|1259
7SYR|1|2|A|1260
7SYR|1|2|C|1261
7SYR|1|2|C|1262
7SYR|1|2|U|1263
7SYR|1|2|C|1264
7SYR|1|2|A|1265
7SYR|1|2|C|1266
*
7SYR|1|2|G|1516
7SYR|1|2|G|1517
7SYR|1|2|C|1518
7SYR|1|2|U|1519
7SYR|1|2|G|1520
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain Q
- uS19
- Chain R
- uS9
- Chain T
- uS13
- Chain V
- uS10
- Chain e
- uS14
Coloring options: