J3_7SYS_003

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7SYS_003 not in the Motif Atlas

Homologous match to J3_8C3A_035

Geometric discrepancy: 0.2854

The information below is about J3_8C3A_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00811.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7SYS|1|2|A|816
7SYS|1|2|G|817
7SYS|1|2|A|818
7SYS|1|2|G|819
*
7SYS|1|2|C|829
7SYS|1|2|A|830
7SYS|1|2|G|831
*
7SYS|1|2|C|843
7SYS|1|2|U|844
7SYS|1|2|G|845
7SYS|1|2|G|846
7SYS|1|2|A|847
7SYS|1|2|U|848

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4 (S4 X isoform)

Chain K

uS4

Chain Z

eS24