J3_7SYS_008
3D structure
- PDB id
- 7SYS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 7SYS|1|2|G|1256, 7SYS|1|2|A|1258, 7SYS|1|2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYS|1|2|C|1237
7SYS|1|2|U|1238
7SYS|1|2|U|1239
7SYS|1|2|A|1240
7SYS|1|2|A|1241
7SYS|1|2|U|1242
7SYS|1|2|U|1243
7SYS|1|2|U|1244
7SYS|1|2|G|1245
*
7SYS|1|2|C|1254
7SYS|1|2|G|1255
7SYS|1|2|G|1256
7SYS|1|2|G|1257
7SYS|1|2|A|1258
7SYS|1|2|A|1259
7SYS|1|2|A|1260
7SYS|1|2|C|1261
7SYS|1|2|C|1262
7SYS|1|2|U|1263
7SYS|1|2|C|1264
7SYS|1|2|A|1265
7SYS|1|2|C|1266
*
7SYS|1|2|G|1516
7SYS|1|2|G|1517
7SYS|1|2|C|1518
7SYS|1|2|U|1519
7SYS|1|2|G|1520
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain Q
- uS19
- Chain R
- uS9
- Chain T
- uS13
- Chain V
- uS10
- Chain e
- uS14
Coloring options: