J3_7SYT_012

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYT|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|2|C|1391
7SYT|1|2|U|1392
7SYT|1|2|G|1393
7SYT|1|2|G|1394
7SYT|1|2|C|1395
*
7SYT|1|2|G|1450
7SYT|1|2|G|1451
7SYT|1|2|A|1452
7SYT|1|2|C|1453
7SYT|1|2|A|1454
7SYT|1|2|A|1455
7SYT|1|2|G|1456
*
7SYT|1|2|C|1470
7SYT|1|2|C|1471
7SYT|1|2|C|1472
7SYT|1|2|G|1473
7SYT|1|2|A|1474
7SYT|1|2|G|1475
7SYT|1|2|A|1476
7SYT|1|2|U|1477
7SYT|1|2|U|1478
7SYT|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29

Chain h

RACK1