J3_7SYT_014

3D structure

PDB id

7SYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

7SYT|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYT|1|2|U|682
7SYT|1|2|G|683
7SYT|1|2|G|684
7SYT|1|2|A|685
*
7SYT|1|2|U|917
7SYT|1|2|U|918
7SYT|1|2|A|919
7SYT|1|2|A|920
7SYT|1|2|G|921
7SYT|1|2|A|922
7SYT|1|2|G|923
*
7SYT|1|2|C|1019
7SYT|1|2|A|1020
7SYT|1|2|U|1021
7SYT|1|2|U|1022
7SYT|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27