J3_7SYU_012

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYU|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|C|1391
7SYU|1|2|U|1392
7SYU|1|2|G|1393
7SYU|1|2|G|1394
7SYU|1|2|C|1395
*
7SYU|1|2|G|1450
7SYU|1|2|G|1451
7SYU|1|2|A|1452
7SYU|1|2|C|1453
7SYU|1|2|A|1454
7SYU|1|2|A|1455
7SYU|1|2|G|1456
*
7SYU|1|2|C|1470
7SYU|1|2|C|1471
7SYU|1|2|C|1472
7SYU|1|2|G|1473
7SYU|1|2|A|1474
7SYU|1|2|G|1475
7SYU|1|2|A|1476
7SYU|1|2|U|1477
7SYU|1|2|U|1478
7SYU|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29

Chain h

RACK1