J3_7SYU_014

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

7SYU|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYU|1|2|U|682
7SYU|1|2|G|683
7SYU|1|2|G|684
7SYU|1|2|A|685
*
7SYU|1|2|U|917
7SYU|1|2|U|918
7SYU|1|2|A|919
7SYU|1|2|A|920
7SYU|1|2|G|921
7SYU|1|2|A|922
7SYU|1|2|G|923
*
7SYU|1|2|C|1019
7SYU|1|2|A|1020
7SYU|1|2|U|1021
7SYU|1|2|U|1022
7SYU|1|2|A|1023

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

40S ribosomal protein S7

Chain M

uS17

Chain O

uS15

Chain X

uS8

Chain Y

uS12

Chain c

eS27