J3_7SYW_005

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7SYW|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYW|1|2|C|1094
7SYW|1|2|C|1095
7SYW|1|2|G|1096
*
7SYW|1|2|U|1136
7SYW|1|2|U|1137
7SYW|1|2|C|1138
7SYW|1|2|C|1139
7SYW|1|2|G|1140
*
7SYW|1|2|C|1147
7SYW|1|2|A|1148
7SYW|1|2|A|1149
7SYW|1|2|A|1150
7SYW|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

40S ribosomal protein SA

Chain W

40S ribosomal protein S21

Chain X

uS8

Chain b

40S ribosomal protein S26

Chain c

eS27