J3_7SYW_008
3D structure
- PDB id
- 7SYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7SYW|1|2|G|1256, 7SYW|1|2|A|1258, 7SYW|1|2|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7SYW_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1008
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7SYW|1|2|C|1237
7SYW|1|2|U|1238
7SYW|1|2|U|1239
7SYW|1|2|A|1240
7SYW|1|2|A|1241
7SYW|1|2|U|1242
7SYW|1|2|U|1243
7SYW|1|2|U|1244
*
7SYW|1|2|G|1255
7SYW|1|2|G|1256
7SYW|1|2|G|1257
7SYW|1|2|A|1258
7SYW|1|2|A|1259
7SYW|1|2|A|1260
7SYW|1|2|C|1261
7SYW|1|2|C|1262
7SYW|1|2|U|1263
7SYW|1|2|C|1264
7SYW|1|2|A|1265
7SYW|1|2|C|1266
*
7SYW|1|2|G|1516
7SYW|1|2|G|1517
7SYW|1|2|C|1518
7SYW|1|2|U|1519
7SYW|1|2|G|1520
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain A
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain Q
- uS19
- Chain T
- uS13
- Chain V
- uS10
- Chain e
- eS29
Coloring options: