J3_7SYW_012

3D structure

PDB id

7SYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYW|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYW|1|2|C|1391
7SYW|1|2|U|1392
7SYW|1|2|G|1393
7SYW|1|2|G|1394
7SYW|1|2|C|1395
*
7SYW|1|2|G|1450
7SYW|1|2|G|1451
7SYW|1|2|A|1452
7SYW|1|2|C|1453
7SYW|1|2|A|1454
7SYW|1|2|A|1455
7SYW|1|2|G|1456
*
7SYW|1|2|C|1470
7SYW|1|2|C|1471
7SYW|1|2|C|1472
7SYW|1|2|G|1473
7SYW|1|2|A|1474
7SYW|1|2|G|1475
7SYW|1|2|A|1476
7SYW|1|2|U|1477
7SYW|1|2|U|1478
7SYW|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29

Chain h

RACK1