J3_7SYW_016
3D structure
- PDB id
- 7SYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wt IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(wt)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGUUCUUAGUU*AACGAGAC*GCAAUAACAG
- Length
- 29 nucleotides
- Bulged bases
- 7SYW|1|2|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7SYW|1|2|C|1337
7SYW|1|2|G|1338
7SYW|1|2|U|1339
7SYW|1|2|U|1340
7SYW|1|2|C|1341
7SYW|1|2|U|1342
7SYW|1|2|U|1343
7SYW|1|2|A|1344
7SYW|1|2|G|1345
7SYW|1|2|U|1346
7SYW|1|2|U|1347
*
7SYW|1|2|A|1382
7SYW|1|2|A|1383
7SYW|1|2|C|1384
7SYW|1|2|G|1385
7SYW|1|2|A|1386
7SYW|1|2|G|1387
7SYW|1|2|A|1388
7SYW|1|2|C|1389
*
7SYW|1|2|G|1481
7SYW|1|2|C|1482
7SYW|1|2|A|1483
7SYW|1|2|A|1484
7SYW|1|2|U|1485
7SYW|1|2|A|1486
7SYW|1|2|A|1487
7SYW|1|2|C|1488
7SYW|1|2|A|1489
7SYW|1|2|G|1490
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S2
- Chain E
- uS3
- Chain R
- uS9
- Chain S
- eS17
- Chain V
- uS10
- Chain e
- eS29
- Chain z
- Internal ribosome entry site; IRES
Coloring options: