J3_7SYX_005

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

7SYX|1|2|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|C|1094
7SYX|1|2|C|1095
7SYX|1|2|G|1096
*
7SYX|1|2|U|1136
7SYX|1|2|U|1137
7SYX|1|2|C|1138
7SYX|1|2|C|1139
7SYX|1|2|G|1140
*
7SYX|1|2|C|1147
7SYX|1|2|A|1148
7SYX|1|2|A|1149
7SYX|1|2|A|1150
7SYX|1|2|G|1151

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2

Chain W

eS21

Chain X

uS8

Chain b

eS26

Chain c

eS27