J3_7SYX_011

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGGA*UUUGUC*GAUAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|U|1350
7SYX|1|2|G|1351
7SYX|1|2|G|1352
7SYX|1|2|A|1353
*
7SYX|1|2|U|1358
7SYX|1|2|U|1359
7SYX|1|2|U|1360
7SYX|1|2|G|1361
7SYX|1|2|U|1362
7SYX|1|2|C|1363
*
7SYX|1|2|G|1375
7SYX|1|2|A|1376
7SYX|1|2|U|1377
7SYX|1|2|A|1378
7SYX|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

uS2

Chain D

uS5

Chain S

eS17

Chain W

eS21