J3_7SYX_012

3D structure

PDB id

7SYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF5B-containing 48S initiation complex, closed conformation. Structure 15(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7SYX|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7SYX|1|2|C|1391
7SYX|1|2|U|1392
7SYX|1|2|G|1393
7SYX|1|2|G|1394
7SYX|1|2|C|1395
*
7SYX|1|2|G|1450
7SYX|1|2|G|1451
7SYX|1|2|A|1452
7SYX|1|2|C|1453
7SYX|1|2|A|1454
7SYX|1|2|A|1455
7SYX|1|2|G|1456
*
7SYX|1|2|C|1470
7SYX|1|2|C|1471
7SYX|1|2|C|1472
7SYX|1|2|G|1473
7SYX|1|2|A|1474
7SYX|1|2|G|1475
7SYX|1|2|A|1476
7SYX|1|2|U|1477
7SYX|1|2|U|1478
7SYX|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain G

uS7

Chain R

uS9

Chain S

eS17

Chain V

uS10

Chain e

eS29

Chain h

RACK1