J3_7TDC_001

3D structure

PDB id

7TDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli thiM riboswitch in complex with thiamine bisphosphonate, calcium ions

Experimental method

X-RAY DIFFRACTION

Resolution

2.46 Å

Loop

Sequence

UC*GUAUAC*GGAA*A

Length

13 nucleotides

Bulged bases

7TDC|1|A|U|54

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TDC_001 not in the Motif Atlas

Homologous match to J3_7TZS_001

Geometric discrepancy: 0.1958

The information below is about J3_7TZS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TDC|1|A|U|14
7TDC|1|A|C|15
*
7TDC|1|A|G|51
7TDC|1|A|U|52
7TDC|1|A|A|53
7TDC|1|A|U|54
7TDC|1|A|A|56
7TDC|1|A|C|57
*
7TDC|1|A|G|82
7TDC|1|A|G|83
7TDC|1|A|A|84
7TDC|1|A|A|85
*
7TDC|1|A|A|85

Current chains

Chain A

thiM riboswitch RNA (83-MER)

Nearby chains