J3_7TM3_003

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UCUCC*GCCGG*CCACGCGUCCCCCGCGAG

Length

28 nucleotides

Bulged bases

7TM3|1|K|C|1237, 7TM3|1|K|G|1271, 7TM3|1|K|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|U|980
7TM3|1|K|C|981
7TM3|1|K|U|982
7TM3|1|K|C|983
7TM3|1|K|C|984
*
7TM3|1|K|G|1070
7TM3|1|K|C|1071
7TM3|1|K|C|1072
7TM3|1|K|G|1073
7TM3|1|K|G|1074
*
7TM3|1|K|C|1236
7TM3|1|K|C|1237
7TM3|1|K|A|1238
7TM3|1|K|C|1239
7TM3|1|K|G|1244
7TM3|1|K|C|1245
7TM3|1|K|G|1246
7TM3|1|K|U|1247
7TM3|1|K|C|1248
7TM3|1|K|C|1249
7TM3|1|K|C|1250
7TM3|1|K|C|1251
7TM3|1|K|C|1252
7TM3|1|K|G|1271
7TM3|1|K|C|1272
7TM3|1|K|G|1273
7TM3|1|K|A|1274
7TM3|1|K|G|1275

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain F

60S ribosomal protein L7

Chain b

eL29