J3_7TM3_016

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

7TM3|1|K|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|4970
7TM3|1|K|A|4971
7TM3|1|K|U|4972
*
7TM3|1|K|G|4986
7TM3|1|K|C|4987
7TM3|1|K|U|4988
7TM3|1|K|U|4989
7TM3|1|K|C|4990
7TM3|1|K|U|4991
*
7TM3|1|K|A|5060
7TM3|1|K|A|5061
7TM3|1|K|G|5062
7TM3|1|K|G|5063

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain d

eL31

Chain w

uL3