J3_7TM3_019

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7TM3|1|K|C|216, 7TM3|1|K|C|217, 7TM3|1|K|A|218, 7TM3|1|K|G|219, 7TM3|1|K|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|196
7TM3|1|K|A|197
7TM3|1|K|A|198
7TM3|1|K|G|199
*
7TM3|1|K|C|215
7TM3|1|K|C|216
7TM3|1|K|C|217
7TM3|1|K|A|218
7TM3|1|K|G|219
7TM3|1|K|C|220
7TM3|1|K|C|221
7TM3|1|K|C|222
7TM3|1|K|G|223
7TM3|1|K|U|224
7TM3|1|K|G|225
7TM3|1|K|G|226
7TM3|1|K|A|227
7TM3|1|K|C|228
*
7TM3|1|K|G|240
7TM3|1|K|G|241
7TM3|1|K|U|242
7TM3|1|K|A|243
7TM3|1|K|G|244

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24