J3_7TM3_022

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

7TM3|1|K|C|704, 7TM3|1|K|U|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|451
7TM3|1|K|A|452
7TM3|1|K|G|453
7TM3|1|K|U|454
7TM3|1|K|C|455
*
7TM3|1|K|G|701
7TM3|1|K|U|702
7TM3|1|K|G|703
7TM3|1|K|C|704
7TM3|1|K|G|705
*
7TM3|1|K|C|1292
7TM3|1|K|G|1293
7TM3|1|K|A|1294
7TM3|1|K|U|1295
7TM3|1|K|G|1296

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain 4

Coiled-coil domain containing 47

Chain E

60S ribosomal protein L6

Chain e

eL32

Chain f

eL33

Chain r

eL28