J3_7TM3_026

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

7TM3|1|K|U|4882, 7TM3|1|K|A|4938, 7TM3|1|K|C|4940, 7TM3|1|K|A|4943, 7TM3|1|K|C|4944, 7TM3|1|K|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TM3|1|K|C|4749
7TM3|1|K|G|4750
7TM3|1|K|G|4751
7TM3|1|K|U|4752
7TM3|1|K|U|4753
7TM3|1|K|G|4754
*
7TM3|1|K|C|4879
7TM3|1|K|C|4880
7TM3|1|K|U|4881
7TM3|1|K|U|4882
7TM3|1|K|C|4883
*
7TM3|1|K|G|4936
7TM3|1|K|C|4937
7TM3|1|K|A|4938
7TM3|1|K|C|4939
7TM3|1|K|C|4940
7TM3|1|K|G|4941
7TM3|1|K|C|4942
7TM3|1|K|A|4943
7TM3|1|K|C|4944
7TM3|1|K|G|4945
7TM3|1|K|U|4946
7TM3|1|K|U|4947
7TM3|1|K|C|4948
7TM3|1|K|G|4949
7TM3|1|K|U|4950
7TM3|1|K|G|4951

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

uL13

Chain f

eL33