J3_7TOO_018
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 7TOO|1|A25S|U|117, 7TOO|1|A25S|G|120, 7TOO|1|A25S|A|121, 7TOO|1|A25S|U|147, 7TOO|1|A25S|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOO|1|A25S|C|113
7TOO|1|A25S|A|114
7TOO|1|A25S|A|115
7TOO|1|A25S|A|116
7TOO|1|A25S|U|117
7TOO|1|A25S|U|118
7TOO|1|A25S|U|119
7TOO|1|A25S|G|120
7TOO|1|A25S|A|121
7TOO|1|A25S|A|122
7TOO|1|A25S|A|123
7TOO|1|A25S|U|124
*
7TOO|1|A25S|A|144
7TOO|1|A25S|G|145
7TOO|1|A25S|U|146
7TOO|1|A25S|U|147
7TOO|1|A25S|G|148
7TOO|1|A25S|U|149
7TOO|1|A25S|A|150
7TOO|1|A25S|A|151
7TOO|1|A25S|U|152
7TOO|1|A25S|U|153
7TOO|1|A25S|U|154
7TOO|1|A25S|G|155
7TOO|1|A25S|G|156
7TOO|1|A25S|A|157
7TOO|1|A25S|G|158
*
7TOO|1|A25S|C|263
7TOO|1|A25S|G|264
7TOO|1|A25S|A|265
7TOO|1|A25S|A|266
7TOO|1|A25S|G|267
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL08
- 60S ribosomal protein L8-A
- Chain AL13
- 60S ribosomal protein L13-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL35
- 60S ribosomal protein L35-A
- Chain AL36
- 60S ribosomal protein L36-A
Coloring options: