J3_7TOO_024
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 7TOO|1|A25S|C|2760, 7TOO|1|A25S|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOO_024 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.0776
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7TOO|1|A25S|G|2651
7TOO|1|A25S|U|2652
7TOO|1|A25S|C|2653
*
7TOO|1|A25S|G|2754
7TOO|1|A25S|C|2755
7TOO|1|A25S|C|2756
7TOO|1|A25S|U|2757
7TOO|1|A25S|A|2758
7TOO|1|A25S|U|2759
7TOO|1|A25S|C|2760
7TOO|1|A25S|G|2761
7TOO|1|A25S|A|2762
7TOO|1|A25S|U|2763
7TOO|1|A25S|C|2764
7TOO|1|A25S|C|2765
*
7TOO|1|A25S|G|2793
7TOO|1|A25S|G|2794
7TOO|1|A25S|U|2795
7TOO|1|A25S|G|2796
7TOO|1|A25S|C|2797
7TOO|1|A25S|C|2798
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AL18
- 60S ribosomal protein L18-A
- Chain AL21
- 60S ribosomal protein L21-A
- Chain AL28
- 60S ribosomal protein L28
- Chain AL42
- 60S ribosomal protein L42-A
- Chain APTN
- Transfer RNA; tRNA
Coloring options: