3D structure

PDB id
7TOO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
7TOO|1|A25S|C|2760, 7TOO|1|A25S|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOO_024 not in the Motif Atlas
Homologous match to J3_8P9A_061
Geometric discrepancy: 0.0776
The information below is about J3_8P9A_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7TOO|1|A25S|G|2651
7TOO|1|A25S|U|2652
7TOO|1|A25S|C|2653
*
7TOO|1|A25S|G|2754
7TOO|1|A25S|C|2755
7TOO|1|A25S|C|2756
7TOO|1|A25S|U|2757
7TOO|1|A25S|A|2758
7TOO|1|A25S|U|2759
7TOO|1|A25S|C|2760
7TOO|1|A25S|G|2761
7TOO|1|A25S|A|2762
7TOO|1|A25S|U|2763
7TOO|1|A25S|C|2764
7TOO|1|A25S|C|2765
*
7TOO|1|A25S|G|2793
7TOO|1|A25S|G|2794
7TOO|1|A25S|U|2795
7TOO|1|A25S|G|2796
7TOO|1|A25S|C|2797
7TOO|1|A25S|C|2798

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL18
60S ribosomal protein L18-A
Chain AL21
60S ribosomal protein L21-A
Chain AL28
60S ribosomal protein L28
Chain AL42
60S ribosomal protein L42-A
Chain APTN
Transfer RNA; tRNA

Coloring options:


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