J3_7TOP_015

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOP_015 not in the Motif Atlas

Homologous match to J3_8P9A_065

Geometric discrepancy: 0.1747

The information below is about J3_8P9A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_81015.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7TOP|1|A25S|C|3298
7TOP|1|A25S|A|3299
7TOP|1|A25S|U|3300
*
7TOP|1|A25S|A|3314
7TOP|1|A25S|G|3315
7TOP|1|A25S|A|3316
7TOP|1|A25S|U|3317
7TOP|1|A25S|G|3318
*
7TOP|1|A25S|C|3388
7TOP|1|A25S|U|3389
7TOP|1|A25S|G|3390

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL17

60S ribosomal protein L17-A

Chain AL31

60S ribosomal protein L31-A