J3_7TOP_020

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACG*CU

Length

28 nucleotides

Bulged bases

7TOP|1|A25S|A|398, 7TOP|1|A25S|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOP_020 not in the Motif Atlas

Homologous match to J3_8P9A_047

Geometric discrepancy: 0.0725

The information below is about J3_8P9A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7TOP|1|A25S|A|369
7TOP|1|A25S|U|370
7TOP|1|A25S|G|371
7TOP|1|A25S|A|372
7TOP|1|A25S|A|373
7TOP|1|A25S|A|374
7TOP|1|A25S|A|375
7TOP|1|A25S|G|376
7TOP|1|A25S|A|377
7TOP|1|A25S|A|378
7TOP|1|A25S|C|379
*
7TOP|1|A25S|G|390
7TOP|1|A25S|A|391
7TOP|1|A25S|G|392
7TOP|1|A25S|U|393
7TOP|1|A25S|G|394
7TOP|1|A25S|A|395
7TOP|1|A25S|A|396
7TOP|1|A25S|A|397
7TOP|1|A25S|A|398
7TOP|1|A25S|A|399
7TOP|1|A25S|G|400
7TOP|1|A25S|U|401
7TOP|1|A25S|A|402
7TOP|1|A25S|C|403
7TOP|1|A25S|G|404
*
7TOP|1|A58S|C|19
7TOP|1|A58S|U|20

Current chains

Chain A25S

25S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

RPL4A isoform 1

Chain AL17

60S ribosomal protein L17-A

Chain AL26

60S ribosomal protein L26-A

Chain AL39

60S ribosomal protein L39