J3_7TOP_021
3D structure
- PDB id
- 7TOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 7TOP|1|A25S|C|1556, 7TOP|1|A25S|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7TOP|1|A25S|A|1537
7TOP|1|A25S|G|1538
7TOP|1|A25S|A|1539
7TOP|1|A25S|U|1540
7TOP|1|A25S|G|1541
7TOP|1|A25S|G|1542
*
7TOP|1|A25S|C|1551
7TOP|1|A25S|G|1552
7TOP|1|A25S|U|1553
7TOP|1|A25S|U|1554
7TOP|1|A25S|U|1555
7TOP|1|A25S|C|1556
7TOP|1|A25S|A|1557
7TOP|1|A25S|A|1558
7TOP|1|A25S|A|1559
7TOP|1|A25S|G|1560
*
7TOP|1|A25S|C|1579
7TOP|1|A25S|A|1580
7TOP|1|A25S|C|1581
7TOP|1|A25S|C|1582
7TOP|1|A25S|A|1583
7TOP|1|A25S|U|1584
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL02
- 60S ribosomal protein L2-A
- Chain AL08
- 60S ribosomal protein L8-A
- Chain AL15
- 60S ribosomal protein L15-A
- Chain AL25
- 60S ribosomal protein L25
- Chain AL37
- 60S ribosomal protein L37-A
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