J3_7TOP_022

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CA*UAACUGAAU*AGGAAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOP|1|A25S|C|1631
7TOP|1|A25S|A|1632
*
7TOP|1|A25S|U|1641
7TOP|1|A25S|A|1642
7TOP|1|A25S|A|1643
7TOP|1|A25S|C|1644
7TOP|1|A25S|U|1645
7TOP|1|A25S|G|1646
7TOP|1|A25S|A|1647
7TOP|1|A25S|A|1648
7TOP|1|A25S|U|1649
*
7TOP|1|A25S|A|1806
7TOP|1|A25S|G|1807
7TOP|1|A25S|G|1808
7TOP|1|A25S|A|1809
7TOP|1|A25S|A|1810
7TOP|1|A25S|G|1811

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL27

60S ribosomal protein L27-A

Chain AL34

60S ribosomal protein L34-A