3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
7TOP|1|A25S|C|2760, 7TOP|1|A25S|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOP_026 not in the Motif Atlas
Homologous match to J3_8P9A_061
Geometric discrepancy: 0.0722
The information below is about J3_8P9A_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7TOP|1|A25S|G|2651
7TOP|1|A25S|U|2652
7TOP|1|A25S|C|2653
*
7TOP|1|A25S|G|2754
7TOP|1|A25S|C|2755
7TOP|1|A25S|C|2756
7TOP|1|A25S|U|2757
7TOP|1|A25S|A|2758
7TOP|1|A25S|U|2759
7TOP|1|A25S|C|2760
7TOP|1|A25S|G|2761
7TOP|1|A25S|A|2762
7TOP|1|A25S|U|2763
7TOP|1|A25S|C|2764
7TOP|1|A25S|C|2765
*
7TOP|1|A25S|G|2793
7TOP|1|A25S|G|2794
7TOP|1|A25S|U|2795
7TOP|1|A25S|G|2796
7TOP|1|A25S|C|2797
7TOP|1|A25S|C|2798

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL18
60S ribosomal protein L18-A
Chain AL21
60S ribosomal protein L21-A
Chain AL28
60S ribosomal protein L28
Chain AL42
60S ribosomal protein L42-A
Chain APTN
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4933 s
Application loaded.