J3_7TOP_027

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

7TOP|1|A25S|A|3172, 7TOP|1|A25S|G|3173, 7TOP|1|A25S|A|3215, 7TOP|1|A25S|G|3216, 7TOP|1|A25S|G|3219, 7TOP|1|A25S|A|3268, 7TOP|1|A25S|U|3270, 7TOP|1|A25S|C|3272, 7TOP|1|A25S|U|3275, 7TOP|1|A25S|G|3276, 7TOP|1|A25S|U|3277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOP_027 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.1766

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

7TOP|1|A25S|U|3171
7TOP|1|A25S|A|3172
7TOP|1|A25S|G|3173
7TOP|1|A25S|A|3174
7TOP|1|A25S|U|3175
7TOP|1|A25S|G|3176
*
7TOP|1|A25S|C|3212
7TOP|1|A25S|A|3213
7TOP|1|A25S|U|3214
7TOP|1|A25S|A|3215
7TOP|1|A25S|G|3216
7TOP|1|A25S|C|3217
7TOP|1|A25S|A|3218
7TOP|1|A25S|G|3219
7TOP|1|A25S|G|3220
*
7TOP|1|A25S|C|3265
7TOP|1|A25S|G|3266
7TOP|1|A25S|A|3267
7TOP|1|A25S|A|3268
7TOP|1|A25S|U|3269
7TOP|1|A25S|U|3270
7TOP|1|A25S|G|3271
7TOP|1|A25S|C|3272
7TOP|1|A25S|A|3273
7TOP|1|A25S|A|3274
7TOP|1|A25S|U|3275
7TOP|1|A25S|G|3276
7TOP|1|A25S|U|3277
7TOP|1|A25S|C|3278
7TOP|1|A25S|A|3279

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6-A

Chain AL14

60S ribosomal protein L14-A

Chain AL16

60S ribosomal protein L16-A

Chain AL17

60S ribosomal protein L17-A

Chain AL33

60S ribosomal protein L33-A