J3_7TOR_003

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOR_003 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.234

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

7TOR|1|A18S|A|816
7TOR|1|A18S|G|817
7TOR|1|A18S|A|818
7TOR|1|A18S|G|819
*
7TOR|1|A18S|C|829
7TOR|1|A18S|A|830
7TOR|1|A18S|G|831
*
7TOR|1|A18S|C|843
7TOR|1|A18S|U|844
7TOR|1|A18S|G|845
7TOR|1|A18S|G|846
7TOR|1|A18S|A|847
7TOR|1|A18S|U|848

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24