J3_7TOR_008
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7TOR|1|A18S|G|1256, 7TOR|1|A18S|A|1258
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOR_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1181
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7TOR|1|A18S|C|1237
7TOR|1|A18S|U|1238
7TOR|1|A18S|U|1239
7TOR|1|A18S|A|1240
7TOR|1|A18S|A|1241
7TOR|1|A18S|U|1242
7TOR|1|A18S|U|1243
7TOR|1|A18S|U|1244
*
7TOR|1|A18S|G|1255
7TOR|1|A18S|G|1256
7TOR|1|A18S|G|1257
7TOR|1|A18S|A|1258
7TOR|1|A18S|A|1259
7TOR|1|A18S|A|1260
7TOR|1|A18S|C|1261
7TOR|1|A18S|C|1262
7TOR|1|A18S|U|1263
7TOR|1|A18S|C|1264
7TOR|1|A18S|A|1265
7TOR|1|A18S|C|1266
*
7TOR|1|A18S|G|1516
7TOR|1|A18S|G|1517
7TOR|1|A18S|C|1518
7TOR|1|A18S|U|1519
7TOR|1|A18S|G|1520
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS15
- 40S ribosomal protein S15
- Chain AS18
- 40S ribosomal protein S18
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
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