3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CUUAAUUU*GGGAAACCUCAC*GGCUG
Length
25 nucleotides
Bulged bases
7TOR|1|A18S|G|1256, 7TOR|1|A18S|A|1258
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7TOR_008 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.1181
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

7TOR|1|A18S|C|1237
7TOR|1|A18S|U|1238
7TOR|1|A18S|U|1239
7TOR|1|A18S|A|1240
7TOR|1|A18S|A|1241
7TOR|1|A18S|U|1242
7TOR|1|A18S|U|1243
7TOR|1|A18S|U|1244
*
7TOR|1|A18S|G|1255
7TOR|1|A18S|G|1256
7TOR|1|A18S|G|1257
7TOR|1|A18S|A|1258
7TOR|1|A18S|A|1259
7TOR|1|A18S|A|1260
7TOR|1|A18S|C|1261
7TOR|1|A18S|C|1262
7TOR|1|A18S|U|1263
7TOR|1|A18S|C|1264
7TOR|1|A18S|A|1265
7TOR|1|A18S|C|1266
*
7TOR|1|A18S|G|1516
7TOR|1|A18S|G|1517
7TOR|1|A18S|C|1518
7TOR|1|A18S|U|1519
7TOR|1|A18S|G|1520

Current chains

Chain A18S
18S rRNA

Nearby chains

Chain AS15
40S ribosomal protein S15
Chain AS18
40S ribosomal protein S18
Chain AS20
40S ribosomal protein S20
Chain AS29
40S ribosomal protein S29

Coloring options:


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