J3_7TOR_010
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOR_010 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3632
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_99563.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7TOR|1|A18S|U|1340
7TOR|1|A18S|C|1341
7TOR|1|A18S|U|1342
7TOR|1|A18S|U|1343
7TOR|1|A18S|A|1344
7TOR|1|A18S|G|1345
*
7TOR|1|A18S|C|1384
7TOR|1|A18S|G|1385
7TOR|1|A18S|A|1386
7TOR|1|A18S|G|1387
7TOR|1|A18S|A|1388
7TOR|1|A18S|C|1389
*
7TOR|1|A18S|G|1481
7TOR|1|A18S|C|1482
7TOR|1|A18S|A|1483
7TOR|1|A18S|A|1484
7TOR|1|A18S|U|1485
7TOR|1|A18S|A|1486
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS02
- 40S ribosomal protein S2
- Chain AS03
- 40S ribosomal protein S3
- Chain AS16
- uS9
- Chain AS17
- 40S ribosomal protein S17
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
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