J3_7TOR_019

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUG*CGCUAAGG*CAC

Length

15 nucleotides

Bulged bases

7TOR|1|A28S|A|1998

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|G|1969
7TOR|1|A28S|A|1970
7TOR|1|A28S|U|1971
7TOR|1|A28S|G|1972
*
7TOR|1|A28S|C|1994
7TOR|1|A28S|G|1995
7TOR|1|A28S|C|1996
7TOR|1|A28S|U|1997
7TOR|1|A28S|A|1998
7TOR|1|A28S|A|1999
7TOR|1|A28S|G|2000
7TOR|1|A28S|G|2001
*
7TOR|1|A28S|C|2016
7TOR|1|A28S|A|2017
7TOR|1|A28S|C|2018

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL12

uL11

Chain ALP0

60S acidic ribosomal protein P0