J3_7TOR_029
3D structure
- PDB id
- 7TOR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 7TOR|1|A5S|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TOR_029 not in the Motif Atlas
- Homologous match to J3_7RQB_015
- Geometric discrepancy: 0.3439
- The information below is about J3_7RQB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08462.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7TOR|1|A5S|C|9
7TOR|1|A5S|C|10
7TOR|1|A5S|A|11
7TOR|1|A5S|U|12
7TOR|1|A5S|A|13
7TOR|1|A5S|C|14
*
7TOR|1|A5S|G|65
7TOR|1|A5S|G|66
*
7TOR|1|A5S|U|109
7TOR|1|A5S|G|110
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL05
- 60S ribosomal protein L5
- Chain AL10
- Ribosomal protein L10
- Chain AL21
- 60S ribosomal protein L21
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