J3_7TOR_032

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCACCAG*CCAGUAA*UGAUUAAGUCCCU

Length

28 nucleotides

Bulged bases

7TOR|1|A18S|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A18S|A|1214
7TOR|1|A18S|C|1215
7TOR|1|A18S|C|1216
7TOR|1|A18S|A|1217
7TOR|1|A18S|C|1218
7TOR|1|A18S|C|1219
7TOR|1|A18S|A|1220
7TOR|1|A18S|G|1221
*
7TOR|1|A18S|C|1645
7TOR|1|A18S|C|1646
7TOR|1|A18S|A|1647
7TOR|1|A18S|G|1648
7TOR|1|A18S|U|1649
7TOR|1|A18S|A|1650
7TOR|1|A18S|A|1651
*
7TOR|1|A18S|U|1673
7TOR|1|A18S|G|1674
7TOR|1|A18S|A|1675
7TOR|1|A18S|U|1676
7TOR|1|A18S|U|1677
7TOR|1|A18S|A|1678
7TOR|1|A18S|A|1679
7TOR|1|A18S|G|1680
7TOR|1|A18S|U|1681
7TOR|1|A18S|C|1682
7TOR|1|A18S|C|1683
7TOR|1|A18S|C|1684
7TOR|1|A18S|U|1685

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS05

Ribosomal protein S5

Chain AS16

uS9

Chain AS28

40S ribosomal protein S28

Chain ETRN

Transfer RNA; tRNA

Chain PTRN

Transfer RNA; tRNA