3D structure

PDB id
7TOR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AGAUGG*CGUUCCGAAGGG*CAGCCGAU
Length
26 nucleotides
Bulged bases
7TOR|1|A28S|C|2470, 7TOR|1|A28S|A|2472, 7TOR|1|A28S|G|2475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7TOR|1|A28S|A|2451
7TOR|1|A28S|G|2452
7TOR|1|A28S|A|2453
7TOR|1|A28S|U|2454
7TOR|1|A28S|G|2455
7TOR|1|A28S|G|2456
*
7TOR|1|A28S|C|2465
7TOR|1|A28S|G|2466
7TOR|1|A28S|U|2467
7TOR|1|A28S|U|2468
7TOR|1|A28S|C|2469
7TOR|1|A28S|C|2470
7TOR|1|A28S|G|2471
7TOR|1|A28S|A|2472
7TOR|1|A28S|A|2473
7TOR|1|A28S|G|2474
7TOR|1|A28S|G|2475
7TOR|1|A28S|G|2476
*
7TOR|1|A28S|C|2501
7TOR|1|A28S|A|2502
7TOR|1|A28S|G|2503
7TOR|1|A28S|C|2504
7TOR|1|A28S|C|2505
7TOR|1|A28S|G|2506
7TOR|1|A28S|A|2507
7TOR|1|A28S|U|2508

Current chains

Chain A28S
28S rRNA

Nearby chains

Chain A58S
5.8S ribosomal RNA; 5.8S rRNA
Chain AL02
60S ribosomal protein L8
Chain AL08
eL8
Chain AL15
60S ribosomal protein L15
Chain AL25
uL23
Chain AL37
60S ribosomal protein L37

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1431 s