J3_7TOR_042

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

7TOR|1|A28S|U|4882, 7TOR|1|A28S|A|4938, 7TOR|1|A28S|C|4940, 7TOR|1|A28S|A|4943, 7TOR|1|A28S|C|4944, 7TOR|1|A28S|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TOR|1|A28S|C|4749
7TOR|1|A28S|G|4750
7TOR|1|A28S|G|4751
7TOR|1|A28S|U|4752
7TOR|1|A28S|U|4753
7TOR|1|A28S|G|4754
*
7TOR|1|A28S|C|4879
7TOR|1|A28S|C|4880
7TOR|1|A28S|U|4881
7TOR|1|A28S|U|4882
7TOR|1|A28S|C|4883
*
7TOR|1|A28S|G|4936
7TOR|1|A28S|C|4937
7TOR|1|A28S|A|4938
7TOR|1|A28S|C|4939
7TOR|1|A28S|C|4940
7TOR|1|A28S|G|4941
7TOR|1|A28S|C|4942
7TOR|1|A28S|A|4943
7TOR|1|A28S|C|4944
7TOR|1|A28S|G|4945
7TOR|1|A28S|U|4946
7TOR|1|A28S|U|4947
7TOR|1|A28S|C|4948
7TOR|1|A28S|G|4949
7TOR|1|A28S|U|4950
7TOR|1|A28S|G|4951

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL06

60S ribosomal protein L6

Chain AL14

60S ribosomal protein L14

Chain AL16

uL13

Chain AL33

60S ribosomal protein L35a