J3_7TOR_043

3D structure

PDB id

7TOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

7TOR|1|A28S|G|409, 7TOR|1|A28S|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TOR_043 not in the Motif Atlas

Homologous match to J3_8P9A_047

Geometric discrepancy: 0.3065

The information below is about J3_8P9A_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7TOR|1|A28S|U|380
7TOR|1|A28S|U|381
7TOR|1|A28S|G|382
7TOR|1|A28S|A|383
7TOR|1|A28S|A|384
7TOR|1|A28S|A|385
7TOR|1|A28S|A|386
7TOR|1|A28S|G|387
7TOR|1|A28S|A|388
7TOR|1|A28S|A|389
7TOR|1|A28S|C|390
*
7TOR|1|A28S|G|401
7TOR|1|A28S|A|402
7TOR|1|A28S|G|403
7TOR|1|A28S|U|404
7TOR|1|A28S|U|405
7TOR|1|A28S|C|406
7TOR|1|A28S|A|407
7TOR|1|A28S|A|408
7TOR|1|A28S|G|409
7TOR|1|A28S|A|410
7TOR|1|A28S|G|411
7TOR|1|A28S|G|412
7TOR|1|A28S|G|413
7TOR|1|A28S|C|414
7TOR|1|A28S|G|415
*
7TOR|1|A58S|C|19
7TOR|1|A58S|A|20

Current chains

Chain A28S

28S rRNA

Chain A58S

5.8S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL17

60S ribosomal protein L17

Chain AL26

60S ribosomal protein L26

Chain AL39

60S ribosomal protein L39