J3_7TQL_001

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TQL_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1024

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7TQL|1|2|A|40
7TQL|1|2|G|41
*
7TQL|1|2|C|481
7TQL|1|2|G|482
7TQL|1|2|C|483
7TQL|1|2|A|484
7TQL|1|2|A|485
7TQL|1|2|A|486
7TQL|1|2|U|487
*
7TQL|1|2|A|512
7TQL|1|2|G|513
7TQL|1|2|U|514

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 5B

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23