J3_7TQL_013

3D structure

PDB id

7TQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the human 40S small ribosomal subunit in complex with translation initiation factors eIF1A and eIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGGCGCAGCGGAAGCGUGC*GAGGUCG*CC

Length

29 nucleotides

Bulged bases

7TQL|1|3|G|15, 7TQL|1|3|C|16, 7TQL|1|3|G|17, 7TQL|1|3|G|18, 7TQL|1|3|A|19, 7TQL|1|3|U|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TQL|1|3|G|7
7TQL|1|3|U|8
7TQL|1|3|G|9
7TQL|1|3|G|10
7TQL|1|3|C|11
7TQL|1|3|G|12
7TQL|1|3|C|13
7TQL|1|3|A|14
7TQL|1|3|G|15
7TQL|1|3|C|16
7TQL|1|3|G|17
7TQL|1|3|G|18
7TQL|1|3|A|19
7TQL|1|3|A|20
7TQL|1|3|G|21
7TQL|1|3|C|22
7TQL|1|3|G|23
7TQL|1|3|U|24
7TQL|1|3|G|25
7TQL|1|3|C|26
*
7TQL|1|3|G|42
7TQL|1|3|A|43
7TQL|1|3|G|44
7TQL|1|3|G|45
7TQL|1|3|U|46
7TQL|1|3|C|47
7TQL|1|3|G|48
*
7TQL|1|3|C|64
7TQL|1|3|C|65

Current chains

Chain 3

Human Met-tRNAiMet

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA