J3_7TTU_006

3D structure

PDB id

7TTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit from Staphylococcus aureus (Strain ATCC43300)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

7TTU|1|1|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TTU_006 not in the Motif Atlas

Homologous match to J3_8VTW_004

Geometric discrepancy: 0.2133

The information below is about J3_8VTW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.5

Basepair signature

cWW-cWW-cWW-cWW-tSH-F-F-F

Number of instances in this motif group

5

Unit IDs

7TTU|1|1|C|1335
7TTU|1|1|G|1336
7TTU|1|1|A|1337
7TTU|1|1|U|1338
7TTU|1|1|U|1339
7TTU|1|1|G|1340
*
7TTU|1|1|C|1669
7TTU|1|1|A|1670
7TTU|1|1|A|1671
*
7TTU|1|1|U|1683
7TTU|1|1|A|1684
7TTU|1|1|A|1685
7TTU|1|1|G|1686

Current chains

Chain 1

23S rRNA

Nearby chains