J3_7TUT_013
3D structure
- PDB id
- 7TUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 7TUT|1|K|C|4116, 7TUT|1|K|U|4117, 7TUT|1|K|U|4118, 7TUT|1|K|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7TUT_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.2192
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
7TUT|1|K|G|4091
7TUT|1|K|G|4092
7TUT|1|K|G|4093
7TUT|1|K|G|4094
*
7TUT|1|K|C|4114
7TUT|1|K|G|4115
7TUT|1|K|C|4116
7TUT|1|K|U|4117
7TUT|1|K|U|4118
7TUT|1|K|C|4119
7TUT|1|K|U|4120
7TUT|1|K|G|4121
7TUT|1|K|G|4122
7TUT|1|K|C|4123
7TUT|1|K|G|4124
7TUT|1|K|C|4125
7TUT|1|K|C|4126
7TUT|1|K|A|4127
7TUT|1|K|A|4128
7TUT|1|K|G|4129
*
7TUT|1|K|C|4155
7TUT|1|K|G|4156
7TUT|1|K|A|4157
7TUT|1|K|C|4158
Current chains
- Chain K
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain X
- eL23
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- 60S ribosomal protein L34
- Chain p
- eL43
Coloring options: