J3_7TUT_023

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CAGCCGAU

Length

26 nucleotides

Bulged bases

7TUT|1|K|C|2470, 7TUT|1|K|A|2472, 7TUT|1|K|G|2475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7TUT_023 not in the Motif Atlas

Homologous match to J3_8GLP_031

Geometric discrepancy: 0.482

The information below is about J3_8GLP_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53783.2

Basepair signature

cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F

Number of instances in this motif group

3

Unit IDs

7TUT|1|K|A|2451
7TUT|1|K|G|2452
7TUT|1|K|A|2453
7TUT|1|K|U|2454
7TUT|1|K|G|2455
7TUT|1|K|G|2456
*
7TUT|1|K|C|2465
7TUT|1|K|G|2466
7TUT|1|K|U|2467
7TUT|1|K|U|2468
7TUT|1|K|C|2469
7TUT|1|K|C|2470
7TUT|1|K|G|2471
7TUT|1|K|A|2472
7TUT|1|K|A|2473
7TUT|1|K|G|2474
7TUT|1|K|G|2475
7TUT|1|K|G|2476
*
7TUT|1|K|C|2501
7TUT|1|K|A|2502
7TUT|1|K|G|2503
7TUT|1|K|C|2504
7TUT|1|K|C|2505
7TUT|1|K|G|2506
7TUT|1|K|A|2507
7TUT|1|K|U|2508

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain X

eL23

Chain j

Ribosomal protein L37

Chain v

5.8S ribosomal RNA; 5.8S rRNA