J3_7TUT_026

3D structure

PDB id

7TUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

7TUT|1|K|U|4882, 7TUT|1|K|A|4938, 7TUT|1|K|C|4940, 7TUT|1|K|A|4943, 7TUT|1|K|C|4944, 7TUT|1|K|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7TUT|1|K|C|4749
7TUT|1|K|G|4750
7TUT|1|K|G|4751
7TUT|1|K|U|4752
7TUT|1|K|U|4753
7TUT|1|K|G|4754
*
7TUT|1|K|C|4879
7TUT|1|K|C|4880
7TUT|1|K|U|4881
7TUT|1|K|U|4882
7TUT|1|K|C|4883
*
7TUT|1|K|G|4936
7TUT|1|K|C|4937
7TUT|1|K|A|4938
7TUT|1|K|C|4939
7TUT|1|K|C|4940
7TUT|1|K|G|4941
7TUT|1|K|C|4942
7TUT|1|K|A|4943
7TUT|1|K|C|4944
7TUT|1|K|G|4945
7TUT|1|K|U|4946
7TUT|1|K|U|4947
7TUT|1|K|C|4948
7TUT|1|K|G|4949
7TUT|1|K|U|4950
7TUT|1|K|G|4951

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

uL13

Chain f

eL33